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SRX25060564: GSM8352418: daf-2lf rep3; Caenorhabditis elegans; RNA-Seq
1 ILLUMINA (Illumina NovaSeq X) run: 21.5M spots, 6.4G bases, 2Gb downloads

External Id: GSM8352418_r1
Submitted by: University of Southern California
Study: Activated SKN-1 alters the longevity trajectory of long-lived C. elegans mutants
show Abstracthide Abstract
In the presence of stressful environments, the SKN-1 cytoprotective transcription factor is activated to induce the expression of gene targets that can restore homeostasis. However, constitutive activation of SKN-1 results in diminished health and a reduction of lifespan. Here we demonstrate the necessity to regulate the activity of SKN-1 for maintaining the longevity promoting responses associated with impaired daf-2/insulin receptor signaling, the eat-2 model of caloric restriction, and glp-1-dependent loss of germ cell proliferation. A hallmark of animals with constitutive SKN-1 activation is the age-dependent loss of somatic lipids and this phenotype is linked to the general reduction in survival in animals harboring the skn-1gf allele, but surprisingly, daf-2lf; skn-1gf double mutant animals do not redistribute somatic lipids which suggests the insulin signaling pathway functions downstream of SKN-1 in the maintenance of lipid distribution. As expected, eat-2lf; skn-1gf double mutant animals, which independently activate SKN-1, continue to display somatic lipid depletion in older ages with and without the skn-1gf activating mutation but animals lacking a proliferating germline do not redistribute somatic lipids, which supports a genetic model where SKN-1 activity is an important regulator of lipid mobilization in response to food availability to fuel the developing germline by engaging the daf-2/insulin receptor pathway. Overall design: Differential expression analysis to undestand the transcriptome differences between daf-2lf mutnats and daf-2lf;skn-1gf double mutants
Sample: daf-2lf rep3
SAMN42051383 • SRS21757192 • All experiments • All runs
Library:
Name: GSM8352418
Instrument: Illumina NovaSeq X
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Worms were lysed in TRIzol then RNA waas extracted using Direct-zol kit (Zymo) Third party library construction service Novogene was used
Runs: 1 run, 21.5M spots, 6.4G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR2955339821,470,7366.4G2Gb2024-07-01

ID:
33397861

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